STRAW: Species TRee Analysis Web server

نویسندگان

  • Timothy I. Shaw
  • Zheng Ruan
  • Travis C. Glenn
  • Liang Liu
چکیده

The coalescent methods for species tree reconstruction are increasingly popular because they can accommodate coalescence and multilocus data sets. Herein, we present STRAW, a web server that offers workflows for reconstruction of phylogenies of species using three species tree methods-MP-EST, STAR and NJst. The input data are a collection of rooted gene trees (for STAR and MP-EST methods) or unrooted gene trees (for NJst). The output includes the estimated species tree, modified Robinson-Foulds distances between gene trees and the estimated species tree and visualization of trees to compare gene trees with the estimated species tree. The web sever is available at http://bioinformatics.publichealth.uga.edu/SpeciesTreeAnalysis/.

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عنوان ژورنال:

دوره 41  شماره 

صفحات  -

تاریخ انتشار 2013